API

Import SpaSRL as:

import SpaSRL

spatial_enhancement(adata[, alpha, ...])	Spatial enhancement of gene expression matrix.
select_landmarks(adata, n_landmarks[, ...])	Select landmark samples [Matsushima19].
run_SRL(adata[, n_neighbors, n_pcs, metric, ...])	Run self-representation learning [Wong17] [Shi21].
expression_denoising(adata[, ...])	Denoise the gene expression matrix using representation matrix.
get_meta_genes(adata[, n_meta_genes, ...])	Get functional meta gene score matrix using discriminant matrix.
refine_spatial_domains(adata, domain_key[, ...])	Refine spatial domains based on spatial neighbors.